Dicom2nifti Github



image_volume. DCM2NII attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. Introducing the oasis R package — a R package implementation of OASIS is Automated Statistical Inference for Segmentation (OASIS) currently hosted on github. Python-future is the missing compatibility layer between Python 2 and Python 3. dcm: DICOM object containing both header and image information. package for converting dicom files to nifti Latest release 2. dicom2nifti. datatype or the NIfTI documentation for more details. Read the Docs v: latest. Stay Updated. 今年 3 月,英伟达的 GTC 2017 大会上展示了很多深度学习技术在医疗领域中的卓越工作。Ian GoodFellow、Jeremy Howard 以及其他的深度学习专家都分享了他们对深度学习的见解。. datatype: is an integer that denotes the type of data contained in each voxel. R/dicom2nifti. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. PyRadiomics features in relate with pixel spacing, and format conversion between dicom and nrrd Showing 1-4 of 4 messages. AAL - Anatomical Automatic Labeling AAL Gin aal. The NIfTI format is thought to be the new standard image format for medical imaging and can be used with for example with FSL, AFNI, SPM, Caret or Freesurfer. Most dcm2niix users work with MRI scans, and so it has been most thoroughly tested in that modality If you have CT examples with these features and dcm2niix does not work as expected, you can generate an issue on the dcm2niix GitHub page. R defines the following functions: dicom2nifti dicom2analyze oro. 6 - Updated about 1 month ago - 70 stars deid. Want to learn more about diffusion tensor imaging (DTI)? Diffusion-imaging. R/dicom2nifti. This answer, while informative, is missing a crucial information - you should never catch an exception this way. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. dicom2nifti. By Alexej's blog (This article was first published on Alexej's blog, nii-dicom2nifti (all_slices). The goal is to develop knowledge to help us with our ultimate goal — medical image analysis with deep learning. I am all for Slicer, as you know, but for example using Slicer for batch conversion of DICOM from command line is extremely slow and not convenient, so for that task I would rather use plastimatch, dcm2niix, or dicom2nifti, which are all maintained, and do the job well and much more efficiently. Please reverse this change before emailing. MRIConverter which automatically builds a subjects directory tree. GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together. [email protected] Reload to refresh your session. com provides background on the tools, methods and software to effective analyze DTI data. sudo pip install dicom2nifti. The NIfTI format is thought to be the new standard image format for medical imaging and can be used with for example with FSL, AFNI, SPM, Caret or Freesurfer. This program is written in C and the github repo is here. A specified directory and its subdirectories are searched for DICOM-files. futures module provides a high-level interface for asynchronously executing callables. com Sat Feb 1 13:00:02 2014 From: markus. It allows you to use a single, clean Python 3. Website for NA-MIC Project Weeks. On Medium, smart. dicom source: R/dicom2nifti. Co-registration. disable_validate_multiframe_implicit. The OASIS algorithm takes structural brain MRI studies with a FLAIR, T1, T2, and PD volume from patients with multiple sclerosis (MS) and produces OASIS probability maps of MS lesion presence, which can be thresholded into a binary. Convert 3D medical images to DICOM 2D series. GitHub GitLab Bitbucket dicom2nifti. dicom_series_to_nifti (original_dicom_directory, output_file, reorient_nifti = True) Supported data ¶ Most anatomical data for CT and MR should be supported as long as they are in classical dicom files. DCM2NII is a stand-alone program that is distributed with MRIcron. Alternatively, you can try dicom2nifti python package to do the conversion with python scripts. Discover open source packages, modules and frameworks you can use in your code. A specified directory and its subdirectories are searched for DICOM-files. 0 and above) in a reliable "generic" fashion (generic meaning user code works similarly on all such sources, without needing per-source adaption). See convert. x-compatible codebase to support both Python 2 and Python 3 with minimal overhead. bic的minc团队开发了一种将dicom转换为minc图像的工具,这个程序是用c语言编写的,点击此链接查看github报告。 由nifti或analyze转换为minc格式 在bic的minc团队开发了另外一种能够将nifti或analyze图像转换为minc图像的工具,这个程序叫做nii2mnc。. GitHub GitLab Bitbucket dicom2nifti. image_volume. I am trying to change the pixel value 1 into 5 and then save it as. import dicom2nifti dicom2nifti. DCM2NII attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. com provides background on the tools, methods and software to effective analyze DTI data. @author: abrys. Neurohacking is the continuous process of using, improving and designing the simplest open source scripted software that depends on the minimum number of software platforms and is dedicated to improving the correctness, reproducibility, and speed of neuroimage data analysis. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. I just fixed it at GitHub. push event scikit-image/scikit-image. There is support for most anatomical CT and MR data. Permission to create Repositories, Projects and Wiki pages. combic-mniminc. nifti pack age cannot apply an arbitrary transform to the imaging data into ( x, y, z ) space – such a transform may. dicom2nifti SPM8 SPM5. AFNI, FSL, SPM) expect the data to be formatted as NIFTI files. I am using Tools for NIfTI and ANALYZE image. Read the Docs v: latest. datatype: is an integer that denotes the type of data contained in each voxel. For classic dicom files dicom2nifti support anatomical. dicom2nifti. I appreciate that You make much effort to organize the data in a reasonable way. Posts include step by step processing and tractography tutorials. disable_pydicom_read_force [source] ¶ Enable the pydicom read force to try to read non conform dicom data. BWH: Attend Partners orientation - Feb 06; Feb 10 - Feb 14. Recent updates to the Python Package Index. A short introduction on how to install packages from the Python Package Index (PyPI), and how to make, distribute and upload your own. GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together. CRAN packages Bioconductor packages R-Forge packages GitHub packages We want your feedback! Note that we can't provide technical support on individual packages. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. image_reorientation. In vivo MRI provides non-invasive, whole brain macroscopic images containing structural and functional information, thereby complementing invasive in vivo high-resolution microscopy and ex vivo molecular techniques. Sign arokem / dicom2nifti. Description. 6 - Updated 25 days ago - 70 stars ohif-dicom-pdf-extension. DCM2NII attempts to convert images from the proprietary scanner format to the NIfTI format used by FSL, SPM5, MRIcron and many other brain imaging tools. com provides background on the tools, methods and software to effective analyze DTI data. R/dicom2nifti. dicom2nifti. I am using Tools for NIfTI and ANALYZE image. The dinifti program converts MRI images stored in DICOM format to NIfTI format. disable_resampling [source] ¶ Disable resampling in case of gantry tilted data (disabled by default) dicom2nifti. bic的minc团队开发了一种将dicom转换为minc图像的工具,这个程序是用c语言编写的,点击此链接查看github报告。 由nifti或analyze转换为minc格式 在bic的minc团队开发了另外一种能够将nifti或analyze图像转换为minc图像的工具,这个程序叫做nii2mnc。. There is support for most anatomical CT and MR data. In these examples, JPEG-2000 achieves an impressive 5:1 compression ratio. PyRadiomics features in relate with pixel spacing, and format conversion between dicom and nrrd Showing 1-4 of 4 messages. R defines the following functions:. Another one to consider is dicom2nifti, which @fedorov recently pointed out. python2 下的庫 dcmstack 可以將一系列的 DICOM 文件堆疊成多維數組。這些數組能夠被寫成 NIFTI 的文件,同時還加上一個可選的頭部擴展,這個頭文件包含原始 DICOM 文件的所有元數據。python3 提供了一個新的用來完成這個格式轉換的庫--dicom2nifti。. 14 The DICOM and NIfTI Data Standards in R At this point in time the oro. 6 - Updated 25 days ago - 70 stars ohif-dicom-pdf-extension. For MR specifically there is support for most 4D data (like DTI and fMRI). Join GitHub today. Read the Docs v: latest. The NIfTI format is thought to be the new standard image format for medical imaging and can be used with for example with FSL, AFNI, SPM, Caret or Freesurfer. It allows you to use a single, clean Python 3. GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together. The OASIS algorithm takes structural brain MRI studies with a FLAIR, T1, T2, and PD volume from patients with multiple sclerosis (MS) and produces OASIS probability maps of MS lesion presence, which can be thresholded into a binary. 本文内容包括医疗图像及其组成,医疗图像格式及其转换。Ian GoodFellow,Jeremy Howard等深度学习专家分享了他们对深度学习的看法。. For "Philips Enhanced Dicom" there is no support for "Implicit VR Endian" transfer syntax. See convert. CENTER-TBI is a large European research project that aims to improve the care for patients with Traumatic Brain Injury (TBI). Thu, 31 Oct 2019 01:02:00 CDT http://dirk. This answer, while informative, is missing a crucial information - you should never catch an exception this way. In vivo MRI provides non-invasive, whole brain macroscopic images containing structural and functional information, thereby complementing invasive in vivo high-resolution microscopy and ex vivo molecular techniques. Some recent activity in stackoverflow was brought to my attention. I just fixed it at GitHub. You signed in with another tab or window. dcm: DICOM object containing both header and image information. ImageVolume (nifti_image) [source] ¶. package for converting dicom files to nifti Latest release 2. The goal is to develop knowledge to help us with our ultimate goal — medical image analysis with deep learning. dicom2nifti converts DICOM files to NIfTI format and creates the gradient table for DTI files. Read the Docs v: latest. dicom2nifti. com (Markus Gschwind) Date: Sat, 1 Feb 2014 19:00:02 +0100 Subject: [Freesurfer] Create a surf from a special volume?. bic的minc团队开发了一种将dicom转换为minc图像的工具,这个程序是用c语言编写的,点击此链接查看github报告。 由nifti或analyze转换为minc格式 在bic的minc团队开发了另外一种能够将nifti或analyze图像转换为minc图像的工具,这个程序叫做nii2mnc。. For MR specifically there is support for most 4D data (like DTI and fMRI). datatype: is an integer that denotes the type of data contained in each voxel. 选自Medium 作者:Taposh Dutta-Roy 机器之心编译 参与:Nurhachu Null、李泽南 今年 3 月,英伟达的 GTC 2017 大会上展示了很多深度学习技术在医疗领域中的卓越工作。. The goal is to develop knowledge to help us with our ultimate goal — medical image analysis with deep learning. Description. Contribute to icometrix/dicom2nifti development by creating an account on GitHub. commit sha 8c90f8d2e395c47696376c3245fb8e880a865bf2. On Medium, smart. This answer, while informative, is missing a crucial information - you should never catch an exception this way. Arguments dcm DICOM object containing both header and image information. DCM2NII is a stand-alone program that is distributed with MRIcron. Blog; Sign up for our newsletter to get our latest blog updates delivered to your inbox weekly. Posts include step by step processing and tractography tutorials. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. PyRadiomics features in relate with pixel spacing, and format conversion between dicom and nrrd Showing 1-4 of 4 messages. By Alexej's blog (This article was first published on Alexej's blog, nii-dicom2nifti (all_slices). Pure python package for DICOM medical file reading and writing. Magnetic resonance imaging (MRI) is a key technology in multimodal animal studies of brain connectivity and disease pathology. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. I am using the images in. In these examples, JPEG-2000 achieves an impressive 5:1 compression ratio. dicom2nifti. Pure python package for DICOM medical file reading and writing. Then organise your Nii files using python scripts(not the best way). concurrent. class dicom2nifti. Alternatively, you can try dicom2nifti python package to do the conversion with python scripts. eddelbuettel. Read the Docs v: latest. Package Synth updated to version 1. See convert. Thank you for reporting the problem. disable_pydicom_read_force [source] ¶ Enable the pydicom read force to try to read non conform dicom data. 14 The DICOM and NIfTI Data Standards in R At this point in time the oro. Q&A for Work. This guide is no longer being maintained - more up-to-date and complete information is in the Python Packaging User Guide. Blog; Sign up for our newsletter to get our latest blog updates delivered to your inbox weekly. GitHub GitLab Bitbucket dicom2nifti. combic-mniminc. 6 - Updated 25 days ago - 70 stars ohif-dicom-pdf-extension. Apr 17, 2017 · Beware that except BaseException and except Exception are not on the same level. Andrey Fedorov (BWH). 每一个程序员都有一个梦想,梦想着能够进入阿里、腾讯、字节跳动、百度等一线互联网公司,由于身边的环境等原因,不知道bat等一线互联网公司使用哪些技术?. ImageVolume (nifti_image) [source] ¶. Bases: object Class representing an imagevolume. By Alexej's blog (This article was first published on Alexej's blog, nii-dicom2nifti (all_slices). Join our discussion forum for questions and answers. inst/doc/dicom. Many sufficient and complete solutions exist for DICOM to NIfTI conversion. io Find an R package R language docs Run R in your browser R Notebooks. package for converting dicom files to nifti Latest release 2. Alternatively, you can try dicom2nifti python package to do the conversion with python scripts. 今年 3 月,英伟达的 GTC 2017 大会上展示了很多深度学习技术在医疗领域中的卓越工作。Ian GoodFellow、Jeremy Howard 以及其他的深度学习专家都分享了他们对深度学习的见解。. Package Synth updated to version 1. As the different transverse MRI modes have are on different scales and different positions, a co-registration step was needed to align the different modes. from the command line 'gdcmconv -w IM-0001-0001. Title: Statistical Framework to Define Subgroups. AAL - Anatomical Automatic Labeling AAL Gin aal. Summary: dicom2nifti converts DICOM-files (. commit sha 8c90f8d2e395c47696376c3245fb8e880a865bf2. DCM2NII is a stand-alone program that is distributed with MRIcron. R/dicom2nifti. GitHub GitLab Bitbucket dicom2nifti. 5 with previous version 1. Website for NA-MIC Project Weeks. image_volume. 6 - Updated about 1 month ago - 70 stars deid. py All gists Back to GitHub. dcm) to NIfTI-files (. Some recent activity in stackoverflow was brought to my attention. Discover open source packages, modules and frameworks you can use in your code. dicom2nifti. To make this process easier and help you get started with diffusion imaging analyses I put together this tutorial that will introduce you to the most important processing steps and tools. But this is simple to solve: you can use an export routine that forces the images to be exported always with a predefined window and not with the window coded at the presentation state of that image. Read the Docs v: latest. From markus. In vivo MRI provides non-invasive, whole brain macroscopic. py All gists Back to GitHub. dicom2nifti. But this is simple to solve: you can use an export routine that forces the images to be exported always with a predefined window and not with the window coded at the presentation state of that image. AWS S3 + CloudFront is a widely-used alternative that has been around for a long time. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. Recent updates to the Python Package Index. Join GitHub today. It is really helpful and my sincere thanks to share your work for the research community. Website for NA-MIC Project Weeks. R defines the following functions:. Andrey Fedorov (BWH). push event scikit-image/scikit-image. futures module provides a high-level interface for asynchronously executing callables. She is currently working on Visual Attention Models in Depp Learning and. Blog; Sign up for our newsletter to get our latest blog updates delivered to your inbox weekly. Thu, 31 Oct 2019 01:02:00 CDT http://dirk. With this package you can convert dicom images to nifti files. GitHub GitLab Bitbucket dicom2nifti. Instead, you should always try to catch just the exceptions you care about, otherwise you will have nightmares when hunting down trivial bugs, hidden by your generic "except"s. Versions latest stable Downloads pdf htmlzip epub On Read the Docs Project Home. futures module provides a high-level interface for asynchronously executing callables. com/cranberries/2019/10/31#Numero_1. 每一个程序员都有一个梦想,梦想着能够进入阿里、腾讯、字节跳动、百度等一线互联网公司,由于身边的环境等原因,不知道bat等一线互联网公司使用哪些技术?. The goal is to develop knowledge to help us with our ultimate goal — medical image analysis with deep learning. Clinical imaging. You signed in with another tab or window. dicom2nifti. 导读之前翻译过前阵子 github很火的 javascript-questions:送你43道JavaScript面试题前些天去看了看已经. The Python Package Index (PyPI) is a repository of software for the Python programming language. inst/doc/dicom. eddelbuettel. x increases from Right (R) to Left (L), y from Posterior (P) to Anterior (A) and z from Inferior (I) to Superior (S). Want to learn more about diffusion tensor imaging (DTI)? Diffusion-imaging. By Taposh Roy, Kaiser Permanente. import dicom2nifti dicom2nifti. MRIConverter which automatically builds a subjects directory tree. push event scikit-image/scikit-image. Project Summary. com provides background on the tools, methods and software to effective analyze DTI data. Looking for pros? Real estate agents; Property managers; Home inspectors; Other pros; Home improvement pros; Home builders; Real estate photographers; I'm a pro. datatype: is an integer that denotes the type of data contained in each voxel. For classic dicom files 4D images like fMRI and DTI/DKI are supported. Website for NA-MIC Project Weeks. I am using Tools for NIfTI and ANALYZE image. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. convert 3D medical images to DICOM 2D series (gui) Nifti2Dicom is a convertion tool that converts 3D NIfTI files (and other formats supported by ITK, including Analyze, MetaImage Nrrd and VTK) to DICOM. GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. io Find an R package R language docs Run R in your browser R Notebooks. dicom2nifti. Versions latest stable Downloads pdf htmlzip epub On Read the Docs Project Home. Title: Synthetic Control Group Method for Comparative Case Studies Description: Implements the synthetic control group method for comparative case studies as described in Abadie and Gardeazabal (2003) and Abadie, Diamond, and Hainmueller (2010, 2011, 2014). Join our discussion forum for questions and answers. MRIConverter which automatically builds a subjects directory tree. Most dcm2niix users work with MRI scans, and so it has been most thoroughly tested in that modality If you have CT examples with these features and dcm2niix does not work as expected, you can generate an issue on the dcm2niix GitHub page. Mariofanna Milanova currently works at the Department of Computer Science, University of Arkansas at Little Rock. Posts include step by step processing and tractography tutorials. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. Specific gradient directions and/or slices can be eliminated. January 27, 2017. Neurohacking is the continuous process of using, improving and designing the simplest open source scripted software that depends on the minimum number of software platforms and is dedicated to improving the correctness, reproducibility, and speed of neuroimage data analysis. Contributors and Acknowledgements¶ External projects used and papers to cite ¶ sammba-mri is essentially a wrapper for a number of other tools, adapting them for use with small mammal brain MRI. See convert. dicom source: R/dicom2nifti. dcm: DICOM object containing both header and image information. Co-registration. Read the Docs v: latest. Join GitHub today. As the different transverse MRI modes have are on different scales and different positions, a co-registration step was needed to align the different modes. settings module¶ dicom2nifti. The goal is to develop knowledge to help us with our ultimate goal — medical image analysis with deep learning. 1-4 dated 2013-08-12. 6 - Updated about 1 month ago - 70 stars deid. PDF | Magnetic resonance imaging (MRI) is a key technology in multimodal animal studies of brain connectivity and disease pathology. See convert. PDF | Many research applications of neuroimaging use magnetic resonance imaging (MRI). Login or Register. For classic dicom files 4D images like fMRI and DTI/DKI are supported. It appears to support some diffusion. But this is simple to solve: you can use an export routine that forces the images to be exported always with a predefined window and not with the window coded at the presentation state of that image. ImageVolume (nifti_image) [source] ¶. Join GitHub today. CRAN packages Bioconductor packages R-Forge packages GitHub packages We want your feedback! Note that we can't provide technical support on individual packages. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. 1-4 dated 2013-08-12. dicom2nifti. As such, recommendations for image analysis and standardized imaging pipelines exist. 今年3月,英伟达的GTC2017大会上展示了很多深度学习技术在医疗领域中的卓越工作。IanGoodFellow、JeremyHoward以及其他的深度学习专家都分享了他们对深度学习的见解。. Bases: object Class representing an imagevolume. It allows you to use a single, clean Python 3. It is really helpful and my sincere thanks to share your work for the research community. PyRadiomics features in relate with pixel spacing, and format conversion between dicom and nrrd Showing 1-4 of 4 messages. Examples include dicom2nifti in the oro. NIfTI is a modern incarnation of the Analyze format, but includes important information like the orientation of the image. The Python-based dicom2nifti shows a different approach - if calls gdcmconv to decode compressed DICOMs to raw DICOM (e. concurrent. com Sat Feb 1 13:00:02 2014 From: markus. Login or Register. CENTER-TBI is a large European research project that aims to improve the care for patients with Traumatic Brain Injury (TBI). GitHub is home to over 40 million developers working together to host and review code, manage projects, and build software together. @author: abrys. Backport PR #4257: Fix active contour gallery example. python2 下的库 dcmstack 可以将一系列的 DICOM 文件堆叠成多维数组。这些数组能够被写成 NIFTI 的文件,同时还加上一个可选的头部扩展,这个头文件包含原始 DICOM 文件的所有元数据。python3 提供了一个新的用来完成这个格式转换的库--dicom2nifti。. These files will then be converted to NIfTI format using SPM functions. 株式会社エキスパートソフトウェア ページを読みこみ中・・・. Please "Check update" from dicm2nii GUI or nii_viewer GUI. Want to learn more about diffusion tensor imaging (DTI)? Diffusion-imaging. Recent updates to the Python Package Index. com/cranberries/2019/10/31#Numero_1. Join GitHub today. class dicom2nifti. dicom2nifti. MRIConverter which automatically builds a subjects directory tree. are_imaging_dicoms (dicom_input) [source] ¶ This function will check the dicom headers to see which type of series it is Possibilities are fMRI, DTI, Anatomical (if no clear type is found anatomical is used). For classic dicom files dicom2nifti support anatomical. Contribute to icometrix/dicom2nifti development by creating an account on GitHub.